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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13027500_13028061_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13027500 - 13028061
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCT
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCTTCTTAAAG
Flanking Amino Acid:
LQLVQDSNLQMLMQQPIPLV
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
69.9
40.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
77.4
0.62
1
78.2
28
Minor 5ss
39.8
-1.1
3.4
59.5
44.9
Minor BPS
71.1
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776