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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13028555_13028994_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13028555 - 13028994
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTCATTT
Flanking Amino Acid:
LRLALAGGAQAIVTPPAPGE
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.7
78.2
35.2
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
47.2
-0.1
1.7
62.66
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776