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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13029093_13029388_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13029093 - 13029388
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
GTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAA
U12 Branch Point Sequence:
CGTGTCACAACG
Flanking Amino Acid:
SSHTALSDSASTSSMRHTDT
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.2
61.4
38.9
Major BPS
50.7
0.02
1.2
61
37.5
Major PPT
84.5
0.78
0.8
76.4
37.7
Minor 5ss
35.5
-1.6
3.5
53.9
43.4
Minor BPS
44.1
-0.5
1.9
48.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776