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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13029513_13030568_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13029513 - 13030568
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCATGT
5'SS Class:
major
3'SS Sequence:
TGGCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTCCCTCTGACG
Flanking Amino Acid:
SIELASSSVKSHSSYLDVGQ
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
63.6
43.6
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
68.8
0.42
0.9
61.6
35
Minor 5ss
44.1
-0.6
3.2
65.8
45.2
Minor BPS
50.9
-0.1
1.8
60.77
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776