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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13032583_13035010_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13032583 - 13035010
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAT
U12 Branch Point Sequence:
TTTTGTTTACCA
Flanking Amino Acid:
LELLARCHEHLMQFGKGKSC
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.1
69.2
36.4
Major BPS
62.2
0.3
1.4
72.5
43.5
Major PPT
83.7
0.76
0.9
78
40.1
Minor 5ss
44.4
-0.6
2.8
64
40.1
Minor BPS
61.5
0.36
2
78.6
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776