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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13040924_13041943_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13040924 - 13041943
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAC
U12 Branch Point Sequence:
CTCTCTTTCTCT
Flanking Amino Acid:
TDPVATDFLNVEKQIEFCCH
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
74.1
37.2
Major BPS
57.8
0.19
1.1
59.6
32.6
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
46.6
-0.3
2.8
62.9
42.7
Minor BPS
42.2
-0.5
3.6
70.73
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776