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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13042065_13042603_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13042065 - 13042603
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGCATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGACAA
U12 Branch Point Sequence:
TTCTTTTGCATC
Flanking Amino Acid:
SVSSLLGHLPSDLVDQNILN
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
81.8
32.5
Major BPS
49.8
-0
1.1
58.8
38.1
Major PPT
78.2
0.63
0.9
78.1
35.1
Minor 5ss
43.3
-0.7
2.8
60.6
43.7
Minor BPS
47.8
-0.1
1.8
61.75
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776