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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13042694_13044550_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13042694 - 13044550
Intron Length:
1857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATAAT
U12 Branch Point Sequence:
CCTTTTGTCACT
Flanking Amino Acid:
NEEFTQLMLEALDGFLIALT
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
57.5
0.19
1.3
60.2
42.9
Major PPT
72.8
0.51
0.9
67
39.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
45.6
-0.2
2.3
65.89
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014933
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015620
13023498 - 13048273
24776