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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13123591_13124807_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13123591 - 13124807
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGACAACTAATA
Flanking Amino Acid:
YFSSKAYIFEGTLGMSNRDS
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.2
0.73
0.8
80.6
31.4
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
43
-0.5
1.9
54.29
37.1

Associated Gene:

Gene:
VMA21
Ensembl Gene ID:
ENSAPLG00000025322
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048300
13123448 - 13126671
3224