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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13124918_13126618_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13124918 - 13126618
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
TTATTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
ALGGLPAPELRNEGSLTSTL
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
58.9
46
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.4
0.84
0.8
85.9
32.9
Minor 5ss
27.5
-2.6
3.6
37.8
47
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
VMA21
Ensembl Gene ID:
ENSAPLG00000025322
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048300
13123448 - 13126671
3224