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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13223855_13228222_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13223855 - 13228222
Intron Length:
4368

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTGCTCTT
5'SS Class:
major
3'SS Sequence:
ATGATGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAT
U12 Branch Point Sequence:
CACTCCATGATG
Flanking Amino Acid:
KRILLTLRTPRLEHLSSHNR
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
67.2
43.9
Major BPS
59.7
0.24
1.2
51.3
42.7
Major PPT
74.1
0.54
1
69.8
45.2
Minor 5ss
30.3
-2.3
4.2
50.3
46
Minor BPS
49.3
-0.2
1.7
51.96
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001166
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026881
13223731 - 13230527
6797