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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13228989_13247006_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13228989 - 13247006
Intron Length:
18018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCATA
5'SS Class:
major
3'SS Sequence:
TCCTTTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
CCTCCGCTAACC
Flanking Amino Acid:
RAGTCFRKREGNIFVVSLSV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.1
38.4
Major BPS
57.1
0.18
1.1
59
36
Major PPT
79.3
0.66
0.7
75.8
26.5
Minor 5ss
36.1
-1.6
3.2
47.6
48.1
Minor BPS
46.3
-0.3
2.3
60.47
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001166
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001152
13228211 - 13247070
18860