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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13257408_13257981_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13257408 - 13257981
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGACTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAA
U12 Branch Point Sequence:
ATCCCCTTGACT
Flanking Amino Acid:
AAKLKEKYEKDVADYKSKGK
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
58.9
0.22
1
50.1
34.6
Major PPT
79.8
0.67
0.9
73
37
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
75
0.87
1.2
83.32
37.4

Associated Gene:

Gene:
HMGB3
Ensembl Gene ID:
ENSAPLG00000015880
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048335
13256407 - 13260485
4079
ENSAPLT00000048119
13257264 - 13279944
22681
ENSAPLT00000024348
13257264 - 13279889
22626
ENSAPLT00000016562
13257264 - 13280345
23082