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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1325801_1329079_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1325801 - 1329079
Intron Length:
3279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGCATGAT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCATACTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTCATACT
Flanking Amino Acid:
VPAVLGCVLLYLSGGVLNDW
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.1
1.1
56.6
36
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
53.3
0.07
1.7
66.3
38.9
Minor 5ss
29.8
-2.3
3.6
44.5
45
Minor BPS
49.5
0.04
2.3
80.68
41.1

Associated Gene:

Gene:
EDA
Ensembl Gene ID:
ENSAPLG00000018744
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036499
1306697 - 1331136
24440