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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13258157_13258645_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13258157 - 13258645
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
GCTTCTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGGTGCTCACTG
Flanking Amino Acid:
KKDPNAPKRPPSGFFLFCSE
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.1
38.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.7
0.42
1
67
38.3
Minor 5ss
34.8
-1.7
3.2
48.1
41.4
Minor BPS
42.7
-0.6
2.2
47.85
45.8

Associated Gene:

Gene:
HMGB3
Ensembl Gene ID:
ENSAPLG00000015880
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048335
13256407 - 13260485
4079
ENSAPLT00000048119
13257264 - 13279944
22681
ENSAPLT00000024348
13257264 - 13279889
22626
ENSAPLT00000016562
13257264 - 13280345
23082