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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13259441_13270453_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13259441 - 13270453
Intron Length:
11013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTTACTTTATT
Flanking Amino Acid:
LFLPLVFGLVGVKMAKGDPK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
75.1
0.62
1
65.6
41
Major PPT
79.9
0.67
0.8
73
32
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
63.1
0.49
1.8
82.05
39

Associated Gene:

Gene:
HMGB3
Ensembl Gene ID:
ENSAPLG00000015880
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048119
13257264 - 13279944
22681
ENSAPLT00000016562
13257264 - 13280345
23082