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Intron Name: Anas_platyrhynchos_platyrhynchos_10_13278446_13280265_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13278446 - 13280265

Intron Length:

1820

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGGT

5'SS Class:

strong_major

3'SS Sequence:

TGCTGTGTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAA

U12 Branch Point Sequence:

GCTTGCTAAAGA

Flanking Amino Acid:

IRAGSVGVQSRWLWGLFGQR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

78.6

35.9

Major BPS

70.1

0.5

1.1

69.9

35.3

Major PPT

74.3

0.55

64.8

45.7

Minor 5ss

33.8

-1.8

3.4

49.7

46.6

Minor BPS

46.2

-0.2

2.3

59.27

46.6

Associated Gene:

Gene:

HMGB3

Ensembl Gene ID:

ENSAPLG00000015880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016562

13257264 - 13280345

23082