About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13310451_13311390_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13310451 - 13311390
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GGGTCACTGACA
Flanking Amino Acid:
DGGYSPDKKKGAGGNTNNEG
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
47.2
-0.2
1.9
58.37
40.6

Associated Gene:

Gene:
CD99L2
Ensembl Gene ID:
ENSAPLG00000027711
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040376
13308925 - 13315149
6225