About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13311617_13313583_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13311617 - 13313583
Intron Length:
1967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TGTTACTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATTGTTACTT
Flanking Amino Acid:
QQKKFCFSIQQGLNAEYVKG
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.6
0.3
1.4
58
47.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80
0.67
0.9
77.2
36.7
Minor 5ss
40.7
-1
2.8
47.6
41.5
Minor BPS
50.4
0.09
2.3
75.74
41.7

Associated Gene:

Gene:
CD99L2
Ensembl Gene ID:
ENSAPLG00000027711
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040376
13308925 - 13315149
6225