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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13313650_13314084_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13313650 - 13314084
Intron Length:
435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTATTAATG
Flanking Amino Acid:
MEAVVSEEPQVKYSVLETQS
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.2
0.88
0.6
81.6
30.4
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
54.9
0.02
1.7
62.23
40.2

Associated Gene:

Gene:
CD99L2
Ensembl Gene ID:
ENSAPLG00000027711
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040376
13308925 - 13315149
6225