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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13321494_13332411_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13321494 - 13332411
Intron Length:
10918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCACCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTTTCTTCACC
Flanking Amino Acid:
VRWNPRMRPQVPIHQNLKEL
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.7
0.69
0.8
74.4
29.6
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
68.9
0.58
1.7
77.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030024
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025773
13320585 - 13340555
19971