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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13332589_13334030_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13332589 - 13334030
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
CNCEKERLKEELSTKTVSLW
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79
0.65
1
80
36.4
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030024
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025773
13320585 - 13340555
19971