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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13334145_13339401_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13334145 - 13339401
Intron Length:
5257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTATTTTAATT
Flanking Amino Acid:
IDCVWQMTKQFPAAFEFNEL
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.6
0.73
0.9
79.4
37.5
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
76.1
0.9
1.1
87.86
31.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030024
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025773
13320585 - 13340555
19971