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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13339495_13340321_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13339495 - 13340321
Intron Length:
827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTATTCTGACTT
Flanking Amino Acid:
WISFGHRFAMRVGHGGDDHA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
68.4
39
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
81.3
0.7
0.8
77.7
35.7
Minor 5ss
36.2
-1.6
3.3
43.9
45.7
Minor BPS
57.8
0.32
1.7
77.16
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030024
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025773
13320585 - 13340555
19971