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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13342058_13344251_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13342058 - 13344251
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGATATC
5'SS Class:
major
3'SS Sequence:
CCTGTCCTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
ACACCCAGAATA
Flanking Amino Acid:
QNSVADTNKVDTFSVF*
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
70.7
39.7
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
62.7
0.29
1
59.7
35.9
Minor 5ss
34.6
-1.8
3
45.6
42.6
Minor BPS
46.9
-0.2
1.7
54.47
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000577
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000922
13342038 - 13358050
16013