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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13344445_13345461_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13344445 - 13345461
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TGCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTTGCTTTATT
Flanking Amino Acid:
AAFRAKGRVPVLSWIHPESQ
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
71.7
33.7
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81.8
0.72
0.9
73.7
40.6
Minor 5ss
34.2
-1.8
3.2
45.6
43.6
Minor BPS
65.1
0.56
2.1
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000577
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000922
13342038 - 13358050
16013