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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13345612_13346262_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13345612 - 13346262
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
CTAACCTGAAAA
Flanking Amino Acid:
YDPMAEYKRQGLPNESWKIS
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
60.3
0.26
1
65.5
28
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
54.7
0.14
1.6
63.75
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000577
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000922
13342038 - 13358050
16013