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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13361600_13363974_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13361600 - 13363974
Intron Length:
2375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATCTCTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TAATACAGATCT
Flanking Amino Acid:
IRWNPRIRQQQPNPVEQRYM
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
79
0.65
0.9
69.5
41.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
44.3
-0.3
2.1
65.81
43.5

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002448
13361039 - 13396494
35456
ENSAPLT00000045397
13361039 - 13392619
31581
ENSAPLT00000041091
13361039 - 13396494
35456