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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13364152_13365443_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13364152 - 13365443
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
AATTTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCTATTTCAATT
Flanking Amino Acid:
IDCVWQMSKQKVTEKTLSLW
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
85.7
25.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.9
75.3
38.6
Minor 5ss
48
-0.2
2.5
66.4
45.1
Minor BPS
49.8
0.06
1.6
63.61
41.8

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041091
13361039 - 13396494
35456