Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13364605_13365443_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13364605 - 13365443

Intron Length:

839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTGTTTTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

TTTGCAATACAA

Flanking Amino Acid:

IDCVWQMSKQFPTAFEFNEQ

Intron Amino Acid Position:

456

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

85.7

25.6

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

85.8

0.8

0.7

85.1

29.7

Minor 5ss

-0.2

2.5

66.4

45.1

Minor BPS

43.6

-0.4

2.2

62.85

42.9

Associated Gene:

Gene:

MTM1

Ensembl Gene ID:

ENSAPLG00000002352

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002448

13361039 - 13396494

35456

ENSAPLT00000045397

13361039 - 13392619

31581