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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13365537_13368442_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13365537 - 13368442
Intron Length:
2906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTTAA
U12 Branch Point Sequence:
TTTTCGTTAACA
Flanking Amino Acid:
WISFGHKFASRIGHGDKNHA
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.9
32.3
Major BPS
59.6
0.24
1.3
51.6
43.9
Major PPT
79.7
0.67
0.9
76.7
37.5
Minor 5ss
39.9
-1.1
3.2
59.5
44.6
Minor BPS
78.2
0.88
2
91.36
30.2

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002448
13361039 - 13396494
35456
ENSAPLT00000045397
13361039 - 13392619
31581
ENSAPLT00000041091
13361039 - 13396494
35456