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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13382304_13383219_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13382304 - 13383219
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTTCACTTAAAG
Flanking Amino Acid:
NSYGLDITCKDMRNLRFALK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
69
0.47
1
69.9
32.6
Major PPT
74.6
0.55
0.9
72.5
37.7
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
58.4
0.12
1.7
64.73
42

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002448
13361039 - 13396494
35456
ENSAPLT00000045397
13361039 - 13392619
31581
ENSAPLT00000041091
13361039 - 13396494
35456