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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13383331_13384345_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13383331 - 13384345
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
AATTTCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTACCCTGAATT
Flanking Amino Acid:
YRLYLRSLENDPVVVLDVPL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
83.1
30.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.1
0.63
0.9
71.3
38.5
Minor 5ss
33.3
-1.9
2.8
41.6
38.3
Minor BPS
70.7
0.73
1.4
83.84
36.4

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045397
13361039 - 13392619
31581
ENSAPLT00000041091
13361039 - 13396494
35456
ENSAPLT00000002448
13361039 - 13396494
35456