About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13385728_13386663_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13385728 - 13386663
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
GTTGTAAAAATA
Flanking Amino Acid:
NSLESSSIKRTLQDGTNWEK
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
75.8
0.64
1
65.8
41
Major PPT
89.2
0.88
0.6
89.2
19.7
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
40.8
-0.7
2
53.43
39.2

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045397
13361039 - 13392619
31581
ENSAPLT00000041091
13361039 - 13396494
35456
ENSAPLT00000002448
13361039 - 13396494
35456