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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13386736_13396491_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13386736 - 13396491
Intron Length:
9756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAA
U12 Branch Point Sequence:
AAGTCTCCAATT
Flanking Amino Acid:
MILSMASSSTP
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
65.8
40
Major BPS
63.3
0.33
1.1
55.4
41.7
Major PPT
83.9
0.76
0.8
81.1
30.9
Minor 5ss
28.7
-2.4
3.5
34.8
43.6
Minor BPS
48
-0
1.8
64.56
40.1

Associated Gene:

Gene:
MTM1
Ensembl Gene ID:
ENSAPLG00000002352
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041091
13361039 - 13396494
35456
ENSAPLT00000002448
13361039 - 13396494
35456