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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13401947_13402833_R

Intron Information:

Intron Rank:
142227
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13401947 - 13402833
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTGATCTAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCTGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
59.4
0.21
1
55.3
39.2
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
57.7
0.32
1.7
76.08
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023850
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024708
13400903 - 13402931
2029