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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13412103_13412391_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13412103 - 13412391
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAC
U12 Branch Point Sequence:
TCCCGGCTAACT
Flanking Amino Acid:
FAAQQMNQFQAVQQPLPTEC
Intron Amino Acid Position:
674

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
51.7
0.04
1.3
55.3
40.3
Major PPT
77.1
0.61
1
72.2
37.8
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
41.1
-0.5
2.5
61.62
47.9

Associated Gene:

Gene:
MAMLD1
Ensembl Gene ID:
ENSAPLG00000003254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027576
13410800 - 13442756
31957
ENSAPLT00000003320
13411078 - 13507438
96361
ENSAPLT00000003316
13410800 - 13485977
75178
ENSAPLT00000003312
13410800 - 13442756
31957