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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13412474_13413936_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13412474 - 13413936
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TGCAACTTGACT
Flanking Amino Acid:
QQIMKRQLMQEKQRQNMLGV
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
81.6
0.71
0.8
72.6
37.6
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
59.9
0.39
1.6
74.1
42.3

Associated Gene:

Gene:
MAMLD1
Ensembl Gene ID:
ENSAPLG00000003254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003320
13411078 - 13507438
96361
ENSAPLT00000003316
13410800 - 13485977
75178
ENSAPLT00000003312
13410800 - 13442756
31957
ENSAPLT00000027576
13410800 - 13442756
31957