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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13414084_13440965_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13414084 - 13440965
Intron Length:
26882

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
PATMPSQNRQDQNPGIVARL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.9
0.58
1
72.8
37.3
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
MAMLD1
Ensembl Gene ID:
ENSAPLG00000003254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003312
13410800 - 13442756
31957
ENSAPLT00000027576
13410800 - 13442756
31957
ENSAPLT00000003320
13411078 - 13507438
96361
ENSAPLT00000003316
13410800 - 13485977
75178