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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13441187_13441399_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13441187 - 13441399
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTAA
5'SS Class:
major
3'SS Sequence:
CACTTTGCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
CTTTCAATAACA
Flanking Amino Acid:
ALHQQPFSPQESATQKMSPL
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73.7
33
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
71.5
0.48
0.9
68.8
36.8
Minor 5ss
37.8
-1.4
3.1
49.1
47.1
Minor BPS
62.3
0.38
1.9
77.79
38.6

Associated Gene:

Gene:
MAMLD1
Ensembl Gene ID:
ENSAPLG00000003254
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003316
13410800 - 13485977
75178
ENSAPLT00000027576
13410800 - 13442756
31957
ENSAPLT00000003320
13411078 - 13507438
96361