About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1344843_1345034_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1344843 - 1345034
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAT
U12 Branch Point Sequence:
CTCTCCTCTCCC
Flanking Amino Acid:
QLGLAAAIQWLGLAESGSGV
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
70.8
34.7
Major BPS
57.1
0.18
1.4
66.4
42.2
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
33.5
-1.9
2.8
46.6
41.8
Minor BPS
38
-0.9
3.6
58.59
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008447
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008766
1344772 - 1346726
1955