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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13509796_13516391_R

Intron Information:

Intron Rank:
144208
Intron Class:
major
Intron Phase:
Intron Coordinates:
13509796 - 13516391
Intron Length:
6596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGACTG
5'SS Class:
major
3'SS Sequence:
TAATTTATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
64.2
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76
0.58
0.9
71.1
39
Minor 5ss
36.2
-1.6
3.1
46.9
48.4
Minor BPS
75.8
0.89
1.1
84.85
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024840
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024238
13508556 - 13516557
8002