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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1353539_1353621_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1353539 - 1353621
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
GGAGGCTGAAAC
Flanking Amino Acid:
AAMVAELELFSENEELEEVA
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
76.5
0.6
0.9
69.4
36.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
42.4
-0.6
2
47.32
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008765
1353326 - 1357678
4353