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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1353952_1354898_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1353952 - 1354898
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGAGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTACTGAAAT
Flanking Amino Acid:
MAAGRQAKIERYKRKKELEN
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.6
0.37
1.1
61.3
43.8
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
61
0.42
1.8
80.81
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008765
1353326 - 1357678
4353