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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1355095_1356119_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1355095 - 1356119
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCGATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TATTTTGTGACT
Flanking Amino Acid:
ILRNRDAAKQSSAPPHGTSR
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
78.2
0.63
0.9
74.2
40.2
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
56.5
0.28
2
78.88
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008765
1353326 - 1357678
4353