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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1356206_1357160_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1356206 - 1357160
Intron Length:
955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
CCTTCCTTGACC
Flanking Amino Acid:
FILTRDVVQSKVFGAGYPSL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
86
0.81
0.7
80.9
24.2
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
78.3
0.87
1.2
77.58
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008765
1353326 - 1357678
4353