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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_1362304_1364586_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1362304 - 1364586
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGGCT
5'SS Class:
major
3'SS Sequence:
GGTGGCGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
CCAGGTTGAACA
Flanking Amino Acid:
LLKLFNENKTKASSWRRKSR
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.3
37.7
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
62.6
0.28
1.1
50.3
48
Minor 5ss
32.5
-2
3.8
47.3
42.8
Minor BPS
43.7
-0.4
1.9
48.02
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008444
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008764
1359364 - 1364629
5266