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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13667545_13669169_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13667545 - 13669169
Intron Length:
1625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CATTTTATAATA
Flanking Amino Acid:
GEKFGRGVIAGLVDIGETSL
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.8
0.67
0.9
74.4
39
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
55.5
0.17
1.6
64.46
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003441
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003501
13666550 - 13669633
3084