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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13672944_13673253_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13672944 - 13673253
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TAGAAATTGATG
Flanking Amino Acid:
TIVVPLLTFEILLVHRLDGH
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
73.9
32.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
87
0.83
0.6
86.1
20.7
Minor 5ss
35.9
-1.6
3.3
46.4
48.9
Minor BPS
43.8
-0.6
1.8
46.27
40.3

Associated Gene:

Gene:
TMEM185A
Ensembl Gene ID:
ENSAPLG00000003446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003517
13670065 - 13684265
14201