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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_13673431_13674347_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13673431 - 13674347
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTTCTTTAATT
Flanking Amino Acid:
LDEIIRWPWLVVCVPLWILM
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
70.6
34.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85.1
0.79
0.8
82
34.8
Minor 5ss
43.7
-0.7
2.6
56.3
42.5
Minor BPS
79.9
1.02
1
85.82
34.8

Associated Gene:

Gene:
TMEM185A
Ensembl Gene ID:
ENSAPLG00000003446
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003517
13670065 - 13684265
14201